A cool way to display FSL results

If your fMRI results (using FSL) are in MNI space, you can use the following Freesurfer command to get beautiful figures for presenting your results.

For right hemisphere:

tksurfer fsaverage rh inflated -overlay <thresh_zstat_imagename>

For left hemisphere:

tksurfer fsaverage lh inflated -overlay <thresh_zstat_imagename>

Results:

Note:

This is an approximation and only for display purposes, but it works (without registration) since the fsaverage brain is in MNI space as well.

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3 Responses to A cool way to display FSL results

  1. Ooh, that’s really very nice – I’m gonna try that!

  2. Pingback: SPM vs. FSL by Chris Rorden, and some miscellaneous fMRI tips « Computing for Psychologists

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